Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
---|---|---|---|---|---|---|---|---|---|
KIRC | rs75726900 | chr2:109453704 | G/C | 3.54E-12 | 503 | 37.73 | 26.3 | 2.3 | KM Plot |
KIRC | rs7573357 | chr2:67539680 | G/A | 1.77E-7 | 507 | 37.37 | 37.7 | 2.03 | KM Plot |
KIRC | rs75802688 | chr16:2944587 | G/A | 2.11E-5 | 502 | 36.9 | 39.23 | 1.98 | KM Plot |
KIRC | rs7585807 | chr2:67669564 | A/T | 1.89E-7 | 509 | 2.03 | 37.7 | 37.37 | KM Plot |
KIRC | rs75952834 | chr20:45034133 | A/G | 1.63E-13 | 508 | 37.77 | 32.52 | 2.17 | KM Plot |
KIRC | rs7606736 | chr2:67541369 | A/G | 1.59E-7 | 507 | 37.42 | 37.67 | 2.03 | KM Plot |
KIRC | rs76089060 | chr11:34805862 | C/T | 9.5E-8 | 504 | 37.53 | 33.35 | 3.3 | KM Plot |
KIRC | rs76120566 | chr4:123087303 | C/G | 2.82E-11 | 507 | 36.88 | 48.23 | 1.97 | KM Plot |
KIRC | rs76148227 | chr16:2945171 | C/T | 2.18E-5 | 501 | 36.9 | 40.25 | 1.98 | KM Plot |
KIRC | rs76190860 | chr11:34769255 | A/G | 1.08E-7 | 500 | 37.67 | 33.35 | 3.3 | KM Plot |
KIRC | rs7621785 | chr3:48343708 | T/C | 7.8E-6 | 502 | 37.67 | 37.77 | 19.13 | KM Plot |
KIRC | rs76222858 | chr15:24451100 | G/A | 1.54E-8 | 499 | 37.5 | 32.7 | 3.3 | KM Plot |
KIRC | rs7624450 | chr3:48350375 | A/G | 7.7E-6 | 505 | 37.6 | 37.77 | 19.13 | KM Plot |
KIRC | rs76272724 | chr16:2935676 | T/C | 2.37E-5 | 506 | 36.12 | 42.2 | 3.37 | KM Plot |
KIRC | rs7632297 | chr3:48348163 | A/C | 7.7E-6 | 504 | 37.6 | 37.77 | 19.13 | KM Plot |